rs250283038 SNP Detail

Summary

• ID
  rs250283038
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100691334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgatgtatt atagatgcac acagccaCAC
  TGTCTCATGT CTGTCTGTTT TAATTCCAGT GGGATTTCTA GAACATTTGA AGGCTCCACT
  CCCCATTAGT CTCTCCTCCT AGAGGTACCA CCTTCATGGA AAGAAAAGGA AAACAGAGGA
  W
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgCGCGCGC ATTGCCAGGA
  GATCACTGAC ACTTCCTTCT TAGAGGTACC AGGCCTTGGA CCAAAGGCCT CATTTGAGGT
  TATTTCAGAC AGTACTAGGC ACAACGATAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321228029	CHEV_4_100506742	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250283038					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100691334 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	408 bp distal