rs250257190 SNP Detail

Summary

• ID
  rs250257190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77646018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGGAGC CTAAATGTTT
  GAGATGCTGC ACAGTAACTT TCTGGAAAAC TGCCTCTTCA TTTAATAAAT ATATTTCTCA
  GTCCTTCCCA AGCTGTATGG ACGCTGCCAG TCTACCCGAC AACACAAATG TTTTTGCCCC
  ATTTGGAGCA TCTATTTTGC CTATATTTTG CTTCATTGTG ACAAAGTTTG CAATAGCCTC
  Y
  GTGTGCTGCT CATCAGATAA GCAAAACCGG AGAGAACCGC CAACCTCCTT TCTAGATGAA
  AATGTTTCCA AATCCAGGAA CTTTTGAGGT CATTCCAAAA TTATTTGTGC TCATGGGGGC
  GGGGGCATTT TCTTTTCCTT GAAGGACCCA GGACACTCGC CATCTGAGTG ATCTCCAGAG
  CCATAGGAAG CAAAGCATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354554508	MGP_WTSI_2_77653731	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250257190					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354554508	MGP_WTSI_2_77653731	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77646018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11837	CpG island 11837	195 bp proximal
Rr559844	regulatory region 559844	153 bp proximal
Rr559845	regulatory region 559845	1132 bp proximal
Rr559846	regulatory region 559846	1314 bp proximal
Rr559847	regulatory region 559847	1383 bp proximal
Tssr24865	transcription start site region 24865	919 bp downstream
Tssr24866	transcription start site region 24866	1006 bp downstream
Tssr24867	transcription start site region 24867	1036 bp downstream
Tssr24868	transcription start site region 24868	1062 bp downstream
Tssr24869	transcription start site region 24869	1084 bp downstream
Tssr24870	transcription start site region 24870	1205 bp downstream
Tssr24871	transcription start site region 24871	1751 bp downstream
Tssr24872	transcription start site region 24872	1817 bp downstream
Tssr24873	transcription start site region 24873	1994 bp downstream
Zfp385b	zinc finger protein 385B	Intron