rs250228791 SNP Detail

Summary

• ID
  rs250228791
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCGCGG GTGACTTTGG
  AGCACCAGGA GGGGGAGACT CGGGGCCACT GATCTCCCTC TGCGCTGGCT TCAGACTCCA
  GAACTGGAGG AGGAAGAGAA AGCGCATAGC TGGGGAGAGG GAAACTTCTC CACCTAGAAA
  GTTTCACCTT GCCGAGGGCG GGGGGTGGGG CGGGGCTTGA GGAAGTGCGA CCCCCCGGGC
  W
  AAGCGTACTG GCTGCGGGAA GGGCGGGGAC GCCAACCCCC CCCCCCCCAA CCCTCCAAGG
  GTGGTGCCAG TCCCCATCTC GGGCCCCAGG AGGGACCGTT GGGGACAAAC CTAGAGCGAC
  AGGGACGAAC AGACACGTGC TGGGGCGGGT ACCCGGGTCT CTTCGCCTCC AGCCCGGACG
  CGCCCGGGCG CCGCTGTTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526406	MGP_WTSI_6_17413697	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250228791					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526406	MGP_WTSI_6_17413697	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	within coordinates
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	within coordinates
Rr626800	regulatory region 626800	202 bp distal
Rr626801	regulatory region 626801	159 bp distal
Rr626802	regulatory region 626802	352 bp proximal
Tssr55050	transcription start site region 55050	255 bp downstream
Tssr55051	transcription start site region 55051	116 bp downstream
Tssr55052	transcription start site region 55052	52 bp upstream
Tssr55053	transcription start site region 55053	129 bp upstream
Tssr55054	transcription start site region 55054	188 bp upstream
Tssr55055	transcription start site region 55055	204 bp upstream
Tssr55056	transcription start site region 55056	230 bp upstream
Tssr55057	transcription start site region 55057	395 bp upstream
Tssr55058	transcription start site region 55058	435 bp upstream
Tssr55059	transcription start site region 55059	474 bp upstream