rs250216587 SNP Detail

Summary

• ID
  rs250216587
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101868045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagaaagga gatttttcgc tgtgggagaa
  gtggagGTCA CACGTAGCTG AGAGACTAAA AGGGCATTGT Gtagttcaca gtgaaaagta
  cggccacggg ggcgggggag tgatttaggt ttgcaagcat tcggacctat ataaagaaaa
  M
  gtgtgatggt gaatgtttat agtcccagaa attgggaggt aaagacagga ggattcctgg
  ggttcactga ccaacctacc ctgggcgaac caatgggtgt tagttcttca ggagaaaGGT
  AGGTAGAGTA AAAAGAATTT TTTACTCTGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320433827	CHEV_2_101877857	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250216587					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101868045 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1712 bp upstream
Rr561615	regulatory region 561615	51 bp distal
Rr561616	regulatory region 561616	645 bp distal
Rr561617	regulatory region 561617	1237 bp proximal
Rr561618	regulatory region 561618	1349 bp proximal
Rr561619	regulatory region 561619	1940 bp proximal
Tssr19089	transcription start site region 19089	1895 bp upstream
Tssr19090	transcription start site region 19090	1916 bp upstream
Tssr19091	transcription start site region 19091	1946 bp upstream