rs250216500 SNP Detail

Summary

• ID
  rs250216500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGAAGA CAGGCTAGTT
  AAAACAATTC TATTGCTACA TCACCTGCAC AGCACAATCC AGTTGTCATG GTGTGCCACA
  TATGAAAAGT CCTATTGAAC AATGCATATG CCTGTACTTG TGTAAGATAA ATGAAAAGAA
  AAAAAATTGT AGAGTAAGCC AGTCCACTAG GAGAGATGTA CAATTTGATT CTAAGAGAGG
  M
  AATTTTTTAT TTTCTTTCCC TGTATTGAAT GATATAACGA GAGAAGGGAG CCTGTGAGAA
  ACTGTGCTTC TTTAATAGGA TGAAGGAGCG ACACTCTCTT TTAGAATCTA GAGAAAGTCC
  ACCGCTCAAA GCTGTGGTAA AATTAACAAT AATTAACAAA CTATAATTAT TTCCAGGCCC
  ACCTTCAAAA TACATTTTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812341	CHEV_6_67486592	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250216500					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	722 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1786 bp distal
Rr631669	regulatory region 631669	1343 bp distal
Rr631670	regulatory region 631670	792 bp distal
Rr631671	regulatory region 631671	522 bp distal
Rr631672	regulatory region 631672	619 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	802 bp upstream
Tssr1872	transcription start site region 1872	1817 bp upstream
Tssr61255	transcription start site region 61255	1853 bp upstream
Tssr61256	transcription start site region 61256	1372 bp upstream
Tssr61257	transcription start site region 61257	901 bp upstream
Tssr61258	transcription start site region 61258	796 bp upstream
Tssr61259	transcription start site region 61259	728 bp upstream