rs250215654 SNP Detail

Summary

• ID
  rs250215654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114871382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGAAAT CAGACTCTTT
  TCAGCAGTTC AGCTGTGGCC ATCGGGTTCT GGGTCACTTT TTGTTTTTAA AAGAAGGGCT
  GTTGGGCAAC TTGGTGAGTA GGCCCAAGCC AGTAGAGATA AAAGATGTGA CATACTGTCT
  GCCACAGCCC AAGTCTGGCC CATACTTCCA CTGCTCAGTG ACCGAGTCGC TGTCCTCCAC
  Y
  CCTTTGGTTA TAATAAGAAA CACCTTTCCA GTGTTCAGAG TCAGATCTTA GAACCAGGAG
  GCTGAGCTCA GCCAAACAAT ACCTGTCTAG TCAGCCAGGT CAGTGTGGCC ATGCAGGGTC
  CAGCCCTGGG CAGGCCTTGG TTGCAGAGCT ACATCGAGGC TGTGGAGAAC CACCTGTGTA
  GCCTTCAGCT AACAATAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914958	CHEV_6_114844439	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250215654					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114871382 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	479 bp downstream
Rr636858	regulatory region 636858	1409 bp distal
Rr636859	regulatory region 636859	within coordinates
Rr636860	regulatory region 636860	547 bp proximal
Rr636861	regulatory region 636861	644 bp proximal
Rr636862	regulatory region 636862	1959 bp proximal
Vgll4	vestigial like family member 4	Intron