rs250205208 SNP Detail

Summary

• ID
  rs250205208
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89178594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTGACAA CTCTGAGCTG
  CTGCACATGC TGGAGTCCCC CCAGTCCCTC TGCTCCAAGG TAGATGAAGC TGTGGCAGTC
  CTGCAGGTTC ATCATGCCAA GAAAGAAGTT GCCCAGAAGG TGGACACTGT TGCTGCTGCT
  ACCTCTTAGA CAAGAATAAG AGTCAAAAGC CAAATAACCC CTCATGGCAT CCAGCTAAGG
  W
  CTGTAGACGT CCTAGTTGTC TGTGGACCTC CACACCAAGA ACCAAGGTGC AAATTCAATA
  GGTCATTTTG TATCAGAAGG TCAATTATGA AGCACCTTAA TTTTGCAATT ATAAGAATAT
  ATTCTCTGGG TTCTGTTGTG ACCCAGATGA TAACTTTTCT TATCCATTCC CACACATATT
  CACCAGGTTT CTGCTTGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CZECHII/EiJ	I/LnJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369145426	MGP_WTSI_6_89151606	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	T	T	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CZECHII/EiJ	I/LnJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250205208					SNP	A	A	A	A	A	A	T	T	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369145426	MGP_WTSI_6_89151606	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89178594 () rs orientation: forward

Symbol	Name	Function Class
Gm44203	predicted gene, 44203	53 bp downstream
Rr634080	regulatory region 634080	444 bp distal