rs250192489 SNP Detail

Summary

• ID
  rs250192489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114156195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATCTAC AATGTGCTTC
  ACACATTTCC TCTTTCAGCA CATGGTTTTC CCCAAGCACC TCAGAACAAT GTCTGCCATC
  AGAATGATGC TAATAGGAAC AGCTCACTCA CAAACAAAAC AAAACAAAAA CTAAAACTAA
  AAACAAAACA AAACAAACAA ACAAAATAAC CCTCTGCTAT CTCAAGCACA GCTGCCCACC
  W
  TGTAGCTTGT CTTTTCTTTG CCTTTTCCTG TCTATGTTAA ACTTCACACA AGGACACAGG
  GAAGAGCAAA GGAGATGCAG GTGCTTGTGG AAGTGACAGA GTCCAGAGGC CCGGAAACCT
  GCCCTGAGGA TGTCTCTCTC CAGTGATCCC ACGTCTACTC CATACATCAT TAATCCTGAG
  TTAATACAAT GGCAGCCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	I/LnJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
ss362912027	MGP_WTSI_4_113971603	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	I/LnJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
rs250192489					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362912027	MGP_WTSI_4_113971603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114156195 () rs orientation: forward

Symbol	Name	Function Class
Rr597539	regulatory region 597539	1464 bp proximal
Rr597540	regulatory region 597540	1538 bp proximal