rs250166214 SNP Detail

Summary

• ID
  rs250166214
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96678390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTTAA AGGCATCCAG
  AACGGGTGGG TTGTCGCCTG GTTTTGGAGG CTTGACCCAA GTATTTTTTC AGGAAGAATC
  GGTCTCTTTT GACTAATTTT TATATAACAT TGTGAAACTA ACCCTCTTTT TCTTTTGTCT
  TAGTTTTTTG AACAGAAAAG TTGTCACTGT TTCGGGGTTT TTTTGATTTT TGGTTTGTTT
  K
  TTTGTTTTTT TTTTTAAGAC AAGCTCTCAC TCTGTAACCT AGGCTACATA GTCTAAACTG
  CGCTTTTTTT TTTTTTTTTT TTTTTGGGTT TGCTGTTGTG TTTGTTTGTT TGTTTGAGAC
  AGGGTTTCTC TGTGTAGCCC TGGCTCTCCT GGAACTCACT CTGTAGAACA GGCTGGTCTT
  GAACTCAGAA ATTCTCCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ
ss384377110	MGP_WTSI_11_96648878	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	T	T	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ
rs250166214					SNP	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	T	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384377110	MGP_WTSI_11_96648878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96678390 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	1563 bp upstream
Rr455508	regulatory region 455508	1143 bp proximal
Rr455509	regulatory region 455509	1696 bp proximal
Tssr104569	transcription start site region 104569	1554 bp upstream
Tssr104570	transcription start site region 104570	1585 bp upstream
Tssr104571	transcription start site region 104571	1649 bp upstream
Tssr104572	transcription start site region 104572	1671 bp upstream
Tssr110346	transcription start site region 110346	1424 bp downstream