rs250116599 SNP Detail

Summary

• ID
  rs250116599
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71852677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTCAGTG ACGATGCAGT
  GGGGCCTCAG TAGTACTGTG GGATCCCTGC AACACACAGC CCAAGTTGTG CAGCCAATCC
  CCAAAAAATA CAAACCCGGG AATCAGTGTT TTCCTTGAGA GTAACACTAC AGAGCTTCAG
  AACCATGCCT TCAACTCCCC CCTCCAACTC GCCTCTCTCC CTTCTTCCAC CTCCCCCCTT
  T
  CCCCCCCCCG CCTCTCCTCC CTGTCTCCCC TTCCCCTGCC TCTCTCTCAT GTTTATGAGT
  GCTATATCTG CATATATGTA CCAGAGTCAT CAGGTCCAAG TATAGATGGT TGTGAACCTT
  CATATGGTTG CTGAGAATTG AACTCAGGAC TGTGGAAGAG CAGTCAGTGT TCTTAGCCAC
  TGAGCCATGT CTCTAGCACT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	NON/ShiLtJ	RF/J
ss375114114	MGP_WTSI_8_73923932	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	NON/ShiLtJ	RF/J
rs250116599					SNP	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375114114	MGP_WTSI_8_73923932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71852677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Babam1	BRISC and BRCA1 A complex member 1			Coding-NonSynonymous
				Intron