rs250114338 SNP Detail

Summary

• ID
  rs250114338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG TCTGCTTCTG GGTGAAACGT
  S
  TTCCCGCCCC CCCCTCGGGA GTCCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SEA/GnJ	ST/bJ
ss916914225	MGP_WTSI_4_89312386	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	G	G	G	C	C	C	C	C	C	C	G	G	G	C	C	G	C	C	G	C	C	C	C	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SEA/GnJ	ST/bJ
rs250114338					SNP	C	C	C	C	C	G	G	G	C	C	C	C	C	C	C	G	G	G	C	C	G	C	C	G	C	C	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916914225	MGP_WTSI_4_89312386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230623 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	1347 bp upstream
Cpgi14441	CpG island 14441	1121 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	1133 bp downstream
Rr595183	regulatory region 595183	1739 bp distal
Rr595184	regulatory region 595184	1213 bp distal
Rr595185	regulatory region 595185	949 bp distal
Rr595186	regulatory region 595186	1121 bp distal
Rr595187	regulatory region 595187	1085 bp proximal
Tssr42412	transcription start site region 42412	1371 bp upstream
Tssr42413	transcription start site region 42413	1361 bp upstream