rs250093006 SNP Detail

Summary

• ID
  rs250093006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82936424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACCTTC ATTTGAGAAT
  TCACCTATGG CCTGTTAACT ACTTTTGAGT CTGGATTTAC TTGGAAGAGC TGGGGAGGAG
  AAGCAGCAAA GACTGGGATA ACATTTCCAA CTTCCGGTAG CTGAGAGACA GACCTTTTTC
  ATCCAATCTT GCCCTCTGTT TTCAGAACCA CAAATGCCCT TCAGGCTGCA GGATGAAAGG
  R
  TTGATTGACG AAGCCAACCA GGATTTTACA AACAGAATCA ACAAGCTCAA AAACTCACTA
  TTTGACTTTC AAAGGAACAA CAAGGATTCT AACTCACTGA CCAGGAATAT CATGGAGTAT
  TTGAGAGGGG ACTTCGCGAA TGCCAACAGT AAGTGAGACA TATTTAGTAG TTGGACTTTC
  TAACAAGTAT GGTAACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676656	MGP_WTSI_3_82833039	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250093006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676656	MGP_WTSI_3_82833039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82936424 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-Synonymous
Rr375250	regulatory region 375250	within coordinates
Tssr29661	transcription start site region 29661	569 bp downstream
Tssr29662	transcription start site region 29662	520 bp downstream
Tssr29663	transcription start site region 29663	503 bp downstream
Tssr29664	transcription start site region 29664	20 bp downstream
Tssr29665	transcription start site region 29665	within coordinates
Tssr29666	transcription start site region 29666	44 bp upstream
Tssr29667	transcription start site region 29667	80 bp upstream
Tssr29668	transcription start site region 29668	1081 bp upstream
Tssr29669	transcription start site region 29669	1125 bp upstream
Tssr29670	transcription start site region 29670	1169 bp upstream
Tssr29671	transcription start site region 29671	1713 bp upstream
Tssr29672	transcription start site region 29672	1816 bp upstream
Tssr29673	transcription start site region 29673	1844 bp upstream
Tssr29674	transcription start site region 29674	1893 bp upstream
Tssr29675	transcription start site region 29675	1903 bp upstream
Tssr29676	transcription start site region 29676	1913 bp upstream
Tssr29677	transcription start site region 29677	1930 bp upstream
Tssr33800	transcription start site region 33800	1985 bp downstream