rs250075698 SNP Detail

Summary

• ID
  rs250075698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85414886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAAATGA GAACAACTGT
  TGTTCCAGGA ACAGTTTAGG CTCTTTGTGG AAATGAGGTT TCATGGAGCT GAGCTGAGTA
  AACTATCAAG ATCACAGGAA AGTGAATACG AAGATTTAAA CTTAGGTTCA AGAGGTTAAT
  AAAGTGAAAA CTCAGGATGC TTATGCGATG TGAAGTTCTG TTAGCATTTT GCACTAACTC
  R
  GATAATTATA CGTCTTATAA CTAATGTTAG AGAGGCCTGA CTACTTTTTG GATGGGTAGC
  AGAGTCAAGA ACAGAAGAGT GCGGACTGGA TTAAGAGTGT CTACTGGCCG GGCAATGGTG
  GCACACACCT TTAATCCCAG CACTTGGAAG GCAGAGGCAG GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CAGAGTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404304	MGP_WTSI_8_87212156	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250075698					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404304	MGP_WTSI_8_87212156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85414886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing			358 bp upstream
Rr666573	regulatory region 666573			366 bp distal
Rr666574	regulatory region 666574			994 bp distal
Rr666575	regulatory region 666575			22 bp distal
Rr666576	regulatory region 666576			438 bp proximal
Rr666577	regulatory region 666577			965 bp proximal
Rr666578	regulatory region 666578			1535 bp proximal
Trmt1	tRNA methyltransferase 1			Intron
				Noncoding-Transcript-Variant
Tssr78429	transcription start site region 78429			1909 bp downstream
Tssr78430	transcription start site region 78430			1012 bp upstream
Tssr78431	transcription start site region 78431			1051 bp upstream
Tssr82111	transcription start site region 82111			1158 bp upstream
Tssr82112	transcription start site region 82112			686 bp upstream
Tssr82113	transcription start site region 82113			638 bp upstream
Tssr82114	transcription start site region 82114			373 bp upstream
Tssr82115	transcription start site region 82115			347 bp upstream