rs250072819 SNP Detail

Summary

• ID
  rs250072819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17309409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGCAC CTCATAAATT
  GGAAGTTAAG ATTGCTAAAA AATCCGTTTA TTAGCCACAC TTCCTTAAAG GGGAAAGAGC
  AGTTTTCTTT TCACCCTTCT TGTGCTGCGT TGGTCAAAGA GGGAGACTCC AATTATAAAA
  GCAGATTTCA TGATTACAAA TTGGCTCCCT TCTATGGAGC CTCCCTGTTG TTGCAATGTG
  R
  ATTCCCAAGA GCCAGAGAGC CTCCTGAGAT GAGTCAGAAA GGCCAGCAGT GTGGATTTGG
  GTCCCCACAC ATAGCATGAC TAAGTGGAGA GAGAAGGCCC CACTGGGAAA AGAGACTTCA
  ACACAGATGG AAAAAAGGCA TAACAGGCTT GGAGGAAATA GCAGTTTACA AAATACTACG
  TCAAGAGTGA GTGTGGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367522304	MGP_WTSI_6_17259410	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250072819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367522304	MGP_WTSI_6_17259410	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17309409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cav1	caveolin 1, caveolae protein			Intron
				Noncoding-Transcript-Variant
Gm15581	predicted gene 15581			within coordinates
Rr626786	regulatory region 626786			1760 bp distal
Rr626787	regulatory region 626787			1777 bp distal
Rr626788	regulatory region 626788			within coordinates
Tssr55038	transcription start site region 55038			1759 bp downstream
Tssr55039	transcription start site region 55039			1666 bp downstream
Tssr55040	transcription start site region 55040			1660 bp downstream
Tssr55041	transcription start site region 55041			1632 bp downstream
Tssr55042	transcription start site region 55042			1517 bp downstream
Tssr55043	transcription start site region 55043			1489 bp downstream
Tssr55044	transcription start site region 55044			1451 bp downstream