rs250028238 SNP Detail

Summary

• ID
  rs250028238
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59603171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAATAAA TAAATAAATA
  AATAAATAAA TGTCTAGAAA TAACATATGT AGAAGACATT TGGCAGGTCA GCTCAGACTG
  AGATTGCAGC TCTGCCTCTC ACCAGGTCGG AGGTGTTCAG CGTGCGAGCC CCAATTTCCA
  TATCATTAAA ATAAGAAAAT CATTTTTTTT CTATACAGGA TTTCAGAACT TTGTGCAAAA
  W
  ATATATATAA TTTATTAGTC AGAGTACCTG GCATATGCAA TATTCAACAG TTAATATTTG
  CAAGTTGTAA AACAAGTTCA GAGCTGTTCC ATGACTGTGC CTGTGGGTAG GATATGTGGG
  AGAACCCAAA TGAGACGTAC TCGGGACCTT TGGATTTGGA ACACTGTAAT AATTCCTTTG
  GGGCTTTTGT GTCAGTGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141225	CHEV_4_59616043	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250028238					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59603171 () rs orientation: forward

Symbol	Name	Function Class
Gm70234	predicted gene, 70234	1266 bp downstream
Hsdl2	hydroxysteroid dehydrogenase like 2	Intron
Rr593095	regulatory region 593095	614 bp distal
Rr593096	regulatory region 593096	239 bp distal