rs250023530 SNP Detail

Summary

• ID
  rs250023530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126435038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTTTTTT AAATAAATTA ACTCCCTTAt
  gtgtgtgtgt gtgtgtttct gtgtgcatgt gGAAGTCAAa gggcagagac aacttatagg
  agcttattct ctcctaccgt gatgattctg gacattgaac ttggttctaa ggcttggcag
  Y
  aagcaccctt agccatgggg tgatttcatt ggccTACATC AGCATTTAAG TAAATTGTTT
  ACTGGGGATG TCACTGAAGT CAGTCGTTTG TATCATAAAT AACTGGAAAC TCAGTACCTT
  TAGAAAAGAA CTCCTAAACC CTCTTAACCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320946910	CHEV_3_126344307	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250023530					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126435038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584664	regulatory region 584664			1538 bp distal
Rr584665	regulatory region 584665			247 bp distal
Rr584666	regulatory region 584666			within coordinates
Rr584667	regulatory region 584667			1741 bp proximal