rs249999246 SNP Detail

Summary

• ID
  rs249999246
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131860504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGCTCTG TTTCAAACAC
  AAAAGCAGAA TCAACAAAGT CTTAAGCTAA GCTCCAAGCC AATGAAGATC TCTTCACCCC
  TCACCCAGAC AAGAACATGG GCAATTGGTT GTATCATGGA GGTCAAGGTT ATAAAAGCCA
  TCATGGCCAG GAGGTGGTGG TACACATCAT TAGTCCCAGC ACTGGGGAGG CAGAGGCAGG
  S
  AGATCTCTGT GAGTTCGAGG CCAGCCTGGT CTACAGAGCA AGTTCCAGGA CAGCCAGGGC
  TACACAGAGA AACCCTGTCT TGAAAAAAAG AAAAAAATAT ATATATCTAT ATATATCATT
  CCTGCTTAAC AGGCAGGTTA TGAAGATTAA GTGAGAATTT GTGTCTTGGG TCTTCTAAGC
  CATGAACTGA GCAGGATAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321330926	CHEV_4_131689108	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249999246					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131860504 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr600881	regulatory region 600881	331 bp distal
Rr600882	regulatory region 600882	1049 bp proximal