rs249989640 SNP Detail

Summary

• ID
  rs249989640
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109247415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT TTCTTTTTTT CTCAGGCAGG
  T
  TTTTGAAGAT CAGCAAAAGG CGCTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320868531	CHEV_3_109143017	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249989640					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109247415 () rs orientation: forward

Symbol	Name	Function Class
Rr367533	regulatory region 367533	1676 bp upstream
Rr583407	regulatory region 583407	64 bp proximal
Tssr31282	transcription start site region 31282	240 bp upstream
Tssr31283	transcription start site region 31283	365 bp upstream
Tssr31284	transcription start site region 31284	528 bp upstream
Tssr31285	transcription start site region 31285	563 bp upstream
Tssr31286	transcription start site region 31286	572 bp upstream
Tssr31287	transcription start site region 31287	604 bp upstream
Tssr31288	transcription start site region 31288	632 bp upstream
Tssr31289	transcription start site region 31289	655 bp upstream
Tssr31290	transcription start site region 31290	694 bp upstream
Vav3	vav guanine nucleotide exchange factor 3	554 bp upstream