rs249969241 SNP Detail

Summary

• ID
  rs249969241
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151949452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTTTG TGTGACAAAA
  CATCCTGACC CATGCAACTT TAGGGTGAAA GTTTGTTTGT TTGTTTGTTT GTTTGTTTGT
  TTTTTGAGAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCACT CTGTAGACTA
  GGCTGGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCGTCC GGAGTGCTGG GATTAAAGGC
  K
  TGCGCCACCA CGCCCGGCTA GGGTGAAAGT CTTATTTGAC TGACAGTCCA TCATGCCAGA
  GGATTCCTGA TGGTAGGAGC TTGAGGCCAT TGGTCGTGTA TCTCCAGTCA GAATGATGAA
  AAACCACTTG GACACCGCTC ACTTTCTTCT CTTTATACAG TTCGGGATTC TAGCCTAAGG
  AGTGATGCTA CCCACAGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562165	CHEV_2_151933268	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249969241					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151949452 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			1420 bp upstream
Cpgi12438	CpG island 12438			1364 bp distal
Rr567288	regulatory region 567288			1998 bp distal
Rr567290	regulatory region 567290			1851 bp distal
Rr567291	regulatory region 567291			994 bp distal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20769	transcription start site region 20769			1793 bp downstream
Tssr20770	transcription start site region 20770			1270 bp downstream
Tssr20771	transcription start site region 20771			481 bp upstream
Tssr20772	transcription start site region 20772			1531 bp upstream
Tssr20773	transcription start site region 20773			1837 bp upstream
Tssr26781	transcription start site region 26781			1476 bp upstream
Tssr26782	transcription start site region 26782			1701 bp downstream