rs249941558 SNP Detail

Summary

• ID
  rs249941558
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141461031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAAATG TGAAGGAATT
  CCAAAGCTGA GGCTATAAAG AAGTCAGGCT TGACAACTCA AGCGTAAAAT CCCAGCATTC
  TGGAGGGAGA GGCAAGCTGG TTTTGAGTCC GAGGCTAGCC TGGGCTCCAA AATGAATTCC
  AAGCCATCTT GAACCACACA GAGAGGGGAG AGCCTGTTTT ATAAAGCCAA AGTTCAAAAC
  C
  GTTTGAGAGT ATAAAGAAAC AACTTTATTT ATTTTTTTTT AAAGATTTAT TTATTATTAT
  ATGTAAGTAC ACTGTAGCTG TCTTCAGACA CACCAGAAGA GGGAGTCAGA TCTTGTTACG
  GATGGTTGTG AGCCACCATG TGGTTGCTGG GATTTGAACT CTGGACCTTC AGAAGAGCAG
  TCGGGTGCTC TTACCCACTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389365	CHEV_4_141289635	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249941558					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141461031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	1196 bp proximal
Gm34863	predicted gene, 34863	within coordinates
Rr603869	regulatory region 603869	1248 bp distal
Rr603870	regulatory region 603870	932 bp proximal
Rr603871	regulatory region 603871	1433 bp proximal