rs249941399 SNP Detail

Summary

• ID
  rs249941399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101569290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCAGGAG TGAGTTCCAA
  ATATTTGTTA TCATAACTTT ATTTATCATT ATATTTTAGG GGCAAGGAAA TAACAGATTT
  GGCTCCCATG TAAAATTTGG TGAATTTGTG AAATTTTCTT ACACCCTGGT GTTCATTTCT
  GATAAATTGG CAGAGGGACA GCAAATATAA AGAAGTACTG AACCGGTGTT AGTGAAGTCC
  Y
  GGAGGGGGTG GTGGTGGGGG AATCATGTTT TTGTACTGAT ATTTAATCTT TGATGAAATA
  ATTTTCATTG TTAATACAAA ATTACCAACA ATGCTACCCG CGTGTGTGCG TGTGGTATGT
  GTATGGTGTA TGAGCATGCC TGTGTATGCA TAGAGGTGAG CGGACGGTTT CAGGTGTCCT
  TTCTGTCCCT CACTACCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321231120	CHEV_4_101384698	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249941399					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101569290 () rs orientation: forward

Symbol	Name	Function Class
Rr596204	regulatory region 596204	1416 bp distal