rs249936889 SNP Detail

Summary

• ID
  rs249936889
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:146066589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAATCATC TTTGTTGAGG TAGGGCTATT
  GAGTTCCTTT GACATGTATA TGTTGATTGA TGCACAATTG ttatttattc tttatttatt
  tatattaatt atGAAGATTA TGATATTATT TGATTGCAGA Ttctctctct ctctctctct
  C
  tctctctctc tctctctctc tctctctctc tctctctctc tctctctGAG CTTTCCCCCT
  GCCACTTTTG ACATTTCACT GTGCATTTTA GGAAAGAATC GTTTTTTCTA GAGGGGTCTG
  CTGAAAGTTT TAACTTTTCT ATCTATCGAG                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320541161	CHEV_2_146050405	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249936889					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146066589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12367	CpG island 12367	680 bp distal
Insm1	insulinoma-associated 1	mRNA-UTR
Rr566645	regulatory region 566645	1770 bp distal
Rr566646	regulatory region 566646	887 bp proximal
Rr566647	regulatory region 566647	1630 bp proximal