rs249932106 SNP Detail

Summary

• ID
  rs249932106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151949429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCACTTT CCCAAGTCTT
  TCTTTTTCTT TTGTGTGACA AAACATCCTG ACCCATGCAA CTTTAGGGTG AAAGTTTGTT
  TGTTTGTTTG TTTGTTTGTT TGTTTTTTGA GACAGGGTTT CTCTGTATAG CCCTGGCTGT
  CCTGGAACTC ACTCTGTAGA CTAGGCTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCG
  K
  CCGGAGTGCT GGGATTAAAG GCTTGCGCCA CCACGCCCGG CTAGGGTGAA AGTCTTATTT
  GACTGACAGT CCATCATGCC AGAGGATTCC TGATGGTAGG AGCTTGAGGC CATTGGTCGT
  GTATCTCCAG TCAGAATGAT GAAAAACCAC TTGGACACCG CTCACTTTCT TCTCTTTATA
  CAGTTCGGGA TTCTAGCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144660	MGP_WTSI_2_151933245	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	G	G	T	G	T	G	T	T	G	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249932106					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	G	G	T	G	T	G	T	T	G	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144660	MGP_WTSI_2_151933245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151949429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			1397 bp upstream
Cpgi12438	CpG island 12438			1341 bp distal
Rr567288	regulatory region 567288			1975 bp distal
Rr567289	regulatory region 567289			1980 bp distal
Rr567290	regulatory region 567290			1828 bp distal
Rr567291	regulatory region 567291			971 bp distal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20769	transcription start site region 20769			1770 bp downstream
Tssr20770	transcription start site region 20770			1247 bp downstream
Tssr20771	transcription start site region 20771			504 bp upstream
Tssr20772	transcription start site region 20772			1554 bp upstream
Tssr20773	transcription start site region 20773			1860 bp upstream
Tssr26781	transcription start site region 26781			1453 bp upstream
Tssr26782	transcription start site region 26782			1724 bp downstream