rs249923970 SNP Detail

Summary

• ID
  rs249923970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:103242701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAATTGT ACTTAAGTAC
  ATGAAAAAGC TGTGTGGTTT GGTTGGTCGG CATAATGATT TTGTATTAGA TGTAAAAATA
  GTATCAGCAC TGGTTTGAAA ATATAAAAAG GCATTACTAA TAGATAGTAA AGTACAGGAG
  AGAGGCAAAA TGGAGTTGGT TAGGAATTAC TAACTGTTTT ATATAGCCTT CTTACTAAGA
  M
  GCTGTTATCT TGGTAATTAA GATAGCTAGA AATAATAAAG TGAGGATATA AAAATTACTG
  TGCATGATAT GTGTGTGTAT GCACACCATA CAGTTACATG GGAGCCAGAG GTGGTGTCAC
  ATTTCTCTTC CCCCATCTTT GTGTGGGTTC TGGGAAGTAA AAGGAGAGTG TGCAACACGG
  GCTTCTGCTG GCTGAGCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320856924	CHEV_3_103139308	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249923970					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103242701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43061	predicted gene 43061			1002 bp downstream
Rr582347	regulatory region 582347			193 bp proximal
Trim33	tripartite motif-containing 33			Intron
				Noncoding-Transcript-Variant