rs249916786 SNP Detail

Summary

• ID
  rs249916786
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135369250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGTGT AGAGTAAGTG
  ATCTGAATCT CGCACCCTCT TAGGAACTTG AGTTCATTAC ATCCCAGAGG GTGGGGAGAT
  GGCCCAGTTG ATAAGGTGCT TGCTGTAGAG CACAAGAACC TGAGTCCAGA GCCCCAGTAC
  CCCAGTGAAA AGCTGGGCTG GCGGCAGTTG TCTGCAGTCC CAGCTACAGG AAGGTGGAGA
  S
  ATGAAGATTT GCTGGCTGGA GGTCTTAGCT GAATCCAGGA GCTGTAGGTT AGGTTAGACA
  CCGTTTCTCA AAATCAAAGA TGGGGAGCCA CCTTCAGCCT CCACACACTT GTGAATGTAC
  ACGTACAGAC AGACAGCACA TACGTGCACA TGATCTTAGA TATGTATGCT TCTGTTCTGA
  TGATAAATAG ATTACTTACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359840538	MGP_WTSI_3_135326453	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249916786					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359840538	MGP_WTSI_3_135326453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135369250 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	979 bp distal
Rr585760	regulatory region 585760	1919 bp proximal
Tssr35804	transcription start site region 35804	176 bp upstream
Tssr35805	transcription start site region 35805	1593 bp downstream
Tssr35806	transcription start site region 35806	1604 bp downstream
Tssr35807	transcription start site region 35807	1624 bp downstream
Tssr35808	transcription start site region 35808	1665 bp downstream
Tssr35809	transcription start site region 35809	1702 bp downstream
Tssr35810	transcription start site region 35810	1727 bp downstream
Tssr35811	transcription start site region 35811	1794 bp downstream
Tssr35812	transcription start site region 35812	1813 bp downstream
Tssr35813	transcription start site region 35813	1854 bp downstream
Tssr35814	transcription start site region 35814	1878 bp downstream
Tssr35815	transcription start site region 35815	1909 bp downstream
Tssr35816	transcription start site region 35816	1926 bp downstream
Tssr35817	transcription start site region 35817	1996 bp downstream