rs249894121 SNP Detail

Summary

• ID
  rs249894121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28076620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGGGGA GAAGGGATTT
  GGCAATGGCT TTGGCTATTT GCTTTAGGAG GGAAATTTGA GCACCAGGAT TCTCAGGAGA
  GGCTTCGACC ACCGGACACT GAACTTCAGG GTCTAGTAAA AATTAGGATA GTATTGTGGG
  AGCCGGCTCT TCACAGCACT TAAGATTCCA GGAGACCAGA GTTGCAGAGG GGCTGGTGCA
  Y
  ACCTGTAACC CCAGAACTTG GAAAAGGCTA AGGCAGGATT ATATTGAGTT CAAAGCCAGC
  CTGGGGTACC ATAATAAGCT CCTATCTCAA AAACAACAGA AGACTTGGGG CCTGGAAGAC
  CAACTGTCAA CTGTCTCCCT CAAACATCTT AGGTACCCTA GGAACGGATC CACCCAAACA
  CTGAATTTGC AAACTAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858509	MGP_WTSI_7_29162214	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249894121					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858509	MGP_WTSI_7_29162214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28076620 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	1785 bp upstream
Gm73785	predicted gene, 73785	521 bp upstream
Gm73803	predicted gene, 73803	1623 bp upstream
Rr380568	regulatory region 380568	409 bp downstream
Rr400209	regulatory region 400209	1263 bp downstream
Rr644238	regulatory region 644238	1133 bp distal
Rr644239	regulatory region 644239	31 bp distal
Rr644240	regulatory region 644240	738 bp proximal
Rr644241	regulatory region 644241	1295 bp proximal
Rr644242	regulatory region 644242	1796 bp proximal
Tssr65460	transcription start site region 65460	1403 bp downstream
Tssr65461	transcription start site region 65461	632 bp downstream
Tssr65462	transcription start site region 65462	457 bp downstream
Tssr65463	transcription start site region 65463	291 bp upstream
Tssr65464	transcription start site region 65464	801 bp upstream
Tssr71489	transcription start site region 71489	1611 bp upstream
Tssr71490	transcription start site region 71490	201 bp upstream
Tssr71491	transcription start site region 71491	104 bp upstream
Tssr71492	transcription start site region 71492	26 bp upstream
Tssr71493	transcription start site region 71493	within coordinates
Tssr71494	transcription start site region 71494	26 bp downstream
Tssr71495	transcription start site region 71495	71 bp downstream
Tssr71496	transcription start site region 71496	422 bp downstream
Tssr71497	transcription start site region 71497	670 bp downstream
Tssr71498	transcription start site region 71498	728 bp downstream
Tssr71499	transcription start site region 71499	821 bp downstream
Tssr71500	transcription start site region 71500	854 bp downstream
Tssr71501	transcription start site region 71501	872 bp downstream
Tssr71502	transcription start site region 71502	912 bp downstream
Tssr71503	transcription start site region 71503	948 bp downstream
Tssr71504	transcription start site region 71504	976 bp downstream
Tssr71505	transcription start site region 71505	992 bp downstream
Tssr71506	transcription start site region 71506	1011 bp downstream
Tssr71507	transcription start site region 71507	1052 bp downstream
Tssr71508	transcription start site region 71508	1074 bp downstream
Tssr71509	transcription start site region 71509	1112 bp downstream
Tssr71510	transcription start site region 71510	1191 bp downstream
Tssr71511	transcription start site region 71511	1230 bp downstream
Tssr71512	transcription start site region 71512	1285 bp downstream
Tssr71513	transcription start site region 71513	1901 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR