rs249888628 SNP Detail

Summary

• ID
  rs249888628
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79104875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCCTG GTGAGGGCCC
  AGGCTAGTAT TTCTGGAACA ACCCTGTTGC AGGACCCACA GTGATCACTA TTTAGGAAAT
  GTGTCTGCAA ACAGTGTTGG GAACACCACA GGAGGAAGAG GCCGGAGTAG AAGATGAAAT
  TATTCCTTGC AGTGCGGAGC TGTGATTTCC TAGCCCCTCT GGGCAGGATG TGCAATGCAC
  A
  GTCCCTGTCC CATACACCTC AGGTCTTGGA TTTCCCAGCC CAGATTGTGG CCGTTCCCTC
  ACACTGCAGG CTTTGGCGCC CCCTGCCGGC CCCGGAGAGC CGTGCCACGC TCCGAGTCCC
  AGCGATGCCA GAAGGGCATG TCACTGCTGG GGCAGGATTA AGTCACTAGA AAGAAAGGAA
  ATGAGTCACC ACTCTTCGCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759318	CHEV_11_79027551	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249888628					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79104875 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	806 bp downstream
Gm74268	predicted gene, 74268	544 bp downstream
Rr402771	regulatory region 402771	18 bp upstream
Rr452198	regulatory region 452198	within coordinates
Rr452199	regulatory region 452199	73 bp proximal