rs249871897 SNP Detail

Summary

• ID
  rs249871897
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37260365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTGCAG AGAAATGGAG
  AAGATGGCAG AAATATGAAG ATCAGAAAGA CTGTCCAAAG GACAGAATAA CAGACAGTAA
  AGGGCCGAGA TGGATTTCAT GAACAAAAGC AAAACTCAAA GTGCACATCA TCTTGCGGTT
  GGGAAGTCCA TCTCCTTCTG CTCCTTGTGG GAAATGAAGC CAATGCCATA TCAAAACAAA
  M
  AAAAAAATCT TGCAGCTTAA CAATCCCAAA AGCTTACATC ATTTTAAAAT CTGTGCACTC
  AACATAGTAA TGTCTCTTTT TTATCTCAAG AAGGTGTTCC TGCATAACTG CATACCTTCT
  AATGAATAGA CTCACAGAAA TAAAAAATAA AGCAATTTTT GTTCTTCCCC ACAGGTTCAT
  GTGAATGACT GATGTCTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357578817	MGP_WTSI_3_37105138	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	C	C	A	C	A	A	C	C	C	C	C	C	C	A	C	C	A	A	C	A	C	C	A	A	A	C	A	C	A	A	A	A	C	A	A	A	A	C	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249871897					SNP	A	A	A	A	C	C	C	A	C	A	A	C	C	C	C	C	C	C	A	C	C	A	A	C	A	C	C	A	A	A	C	A	C	A	A	A	A	C	A	A	A	A	C	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357578817	MGP_WTSI_3_37105138	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37260365 () rs orientation: forward

Symbol	Name	Function Class
Gm64461	predicted gene, 64461	within coordinates
Gm64469	predicted gene, 64469	1428 bp upstream
Rr367425	regulatory region 367425	1749 bp downstream
Rr367426	regulatory region 367426	699 bp downstream
Rr397645	regulatory region 397645	1938 bp downstream
Rr575433	regulatory region 575433	1439 bp distal
Rr575435	regulatory region 575435	1278 bp distal
Rr575436	regulatory region 575436	468 bp distal