rs249839469 SNP Detail

Summary

• ID
  rs249839469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83975170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACCTTGA ACTCACAGAA
  ATCACCTGAG AGCTTTGATA AGGTACGAAC CAGCACACAG AGACATAAAC TTTTAATTAA
  TTCTTTGACA ATTTCATACA ATATATTTGA ATCCTATTCA TTCTTCCAAC TCCTCTCAGA
  TTCTCCCCCA CCCAGCCCTA CCTACCCAAC CTCCTTGTAT CCTCCTTTAA AAACAAAAAA
  M
  AAAAAAAACC TCATCAACTC CAATGTATGC AACCCACATA CTCCAGGGGT GCACTCATCC
  ACTGGAGCAT AACCTACCAA GGCCTTCACC CTTCCCTCCC TCCCTACCCC CTCCCTCCCT
  TCCAGCAGCC TCCAATTGCC AATAGCTCCT CAAGTGGGAA TGGGACCTGT GCCCACCTCA
  CCTCTCTGTA TTGGAATCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320822188	CHEV_3_83871785	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249839469					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83975170 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Rr397735	regulatory region 397735	1314 bp upstream
Rr578973	regulatory region 578973	1581 bp distal
Rr578974	regulatory region 578974	1292 bp proximal
Rr578975	regulatory region 578975	1578 bp proximal