rs249748789 SNP Detail

Summary

• ID
  rs249748789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17630696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATGGAAA TAGGAGTTCA CTTGTTGAGA AGAAGAGGTT
  TGGTGGGAGT GGGGGGGGGA ATAAGAAAGG TTAATTAGGT GGTGACAGTT CACATATATA
  Y
  ATAGATGGAG ATGTCAAAGA ATACCACATT TCTTAAAAGG CAGGAATATT TTTAAAGGAC
  GGATAGGGTA AGACAATGGG AGAGAGATAA ATAGGAATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321755911	CHEV_6_17580697	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249748789					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17630696 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1298 bp distal
Rr626821	regulatory region 626821	508 bp distal
Rr626822	regulatory region 626822	1012 bp proximal