rs249740687 SNP Detail

Summary

• ID
  rs249740687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131194777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC CTCTCATTCT CTGTGTGTCC
  R
  GCTGCTTTGA TGTCTCTTAA ACATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320967769	CHEV_3_131151980	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249740687					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131194777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13839	CpG island 13839			596 bp proximal
Gm36753	predicted gene, 36753			1300 bp upstream
Rr585350	regulatory region 585350			125 bp distal
Rr585351	regulatory region 585351			876 bp proximal
Rr585352	regulatory region 585352			1389 bp proximal
Rr585353	regulatory region 585353			1649 bp proximal
Sgms2	sphingomyelin synthase 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr1055	transcription start site region 1055			696 bp upstream
Tssr1056	transcription start site region 1056			989 bp upstream
Tssr31735	transcription start site region 31735			721 bp upstream
Tssr31736	transcription start site region 31736			1335 bp upstream
Tssr35707	transcription start site region 35707			within coordinates
Tssr35708	transcription start site region 35708			19 bp downstream
Tssr35709	transcription start site region 35709			731 bp downstream
Tssr35710	transcription start site region 35710			747 bp downstream
Tssr35711	transcription start site region 35711			895 bp downstream
Tssr35712	transcription start site region 35712			921 bp downstream
Tssr35713	transcription start site region 35713			1162 bp downstream
Tssr35714	transcription start site region 35714			1436 bp downstream
Tssr35715	transcription start site region 35715			1494 bp downstream
Tssr35716	transcription start site region 35716			1637 bp downstream
Tssr35717	transcription start site region 35717			1713 bp downstream
Tssr35718	transcription start site region 35718			1731 bp downstream
Tssr35719	transcription start site region 35719			1974 bp downstream