rs249728745 SNP Detail

Summary

• ID
  rs249728745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116486352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGGCAC ACACCTTTAT
  AATTTATTTA GTTGTATTTC ATGTACATTG GTATCTTGTC TGCATGTATG TCTGTGTAAG
  GGTGTCTGAA CCCTTGGAAC AAGAACTACA GATAGTTTGT TCCTCTCCAA GAATAGCCAG
  TGCTCTTTAA CCGGTGAGCC ATCTCTCCAG TCCTAGCACA CACCTTTAAT CTCAGCACTC
  R
  GGAGGCAGAC TGGTCTCCCT GGATTTGAAC CCAGAATGTT TTACAGAGCT AGTTCTAAGA
  CAGCACACCT GTTTCAGCAC TCCAAAGGCA GAAGCTGTTG AGGCAACCTA ATCTATGTAA
  GGAATTCCAA CACAGCCAAG GCTTCATAGT GAGATCTTGT TTCCAAAAAA AAAAAAAAAT
  TTTGTCCGGC AGTGGTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277630	CHEV_4_116301760	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249728745					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116486352 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	468 bp downstream
Cpgi14636	CpG island 14636	1641 bp distal
Gm69034	predicted gene, 69034	1569 bp upstream
Nasp	nuclear autoantigenic sperm protein (histone-binding)	mRNA-UTR
Rr398404	regulatory region 398404	1460 bp downstream
Rr398405	regulatory region 398405	991 bp downstream
Rr597936	regulatory region 597936	1688 bp distal
Rr597938	regulatory region 597938	724 bp distal
Rr597939	regulatory region 597939	268 bp distal
Tssr42894	transcription start site region 42894	1758 bp upstream
Tssr42895	transcription start site region 42895	1652 bp upstream
Tssr42896	transcription start site region 42896	1247 bp upstream
Tssr42897	transcription start site region 42897	1199 bp upstream
Tssr42898	transcription start site region 42898	1167 bp upstream