rs249724443 SNP Detail

Summary

• ID
  rs249724443
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113598655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTGCTGA GCTCCCTCTA
  GTCCTTATTT TTATTCTTTA GGTTTTTTTA AATTTTACTT ACTGTCTTTA TGTATGTATG
  TGTATGTATG TACTATCAGG TATGTGTGTG CGCAAACTGC ATGCCTGGTA CCCACGAAAG
  TGTCCGATCC CCTGGGACTG GGGTCCCATA TGGTTGTGAG CTGCCAATCA AACCAGAGTC
  K
  TCTGCAAGAG CAGCCAGTGC TCCTAACCAA GGAGCCAACT CTCCACCGTA TTTTTATTTT
  TAAATCATGT ATGTATGTTT GTTTGTGTAT GGGGGCGGGG GGGGGCTTGC ACATGTCTGT
  GGAGGTCAGA AGAGGGCATT GAACTCCCTA GACCTGGAGT GACAGGCAGT TGTGGGCCAC
  CTGATGTGGA TGCTGGGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911125	CHEV_6_113571688	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249724443					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113598655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1977 bp proximal
Rr636555	regulatory region 636555	1887 bp proximal
Tssr62461	transcription start site region 62461	1834 bp downstream