rs249713234 SNP Detail

Summary

• ID
  rs249713234
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143912079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTGCTG GTGAATGCAA
  ATCACACCCT GGTTTTCAGA GATGAAGGAA ACTTTATGGG CAAAGCTTTT TGCTCACCAT
  TCTGCTTCAG TGTAGAGGGT GTGATGCTAG CTCCCTCGTA GCCCCCTAAA GCGATGCGAG
  CATTTGCCAG ACCTGCTGCT AGCTCACGAC CCTGAAAAAA GACTAGTCGT TTCTTGTACA
  W
  ACCAAGATTT GAGGAATGCT AGCTAGCTTC AGAGCCTCTT TCCAGGGCCA GAGCTCAGCC
  TGGATCCTTG AACATCAAGT TATTCAACTT TACTCTGCCA AATAGGTTTA ATAAATCTCC
  GATCTGAGGT TAATACTAGG GTTGATTATT AATAGTAAGT TCCAGAGAGA TTTTTCTGTT
  GGAAATTATC ATGGAAGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062427	MGP_WTSI_3_143869282	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249713234					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062427	MGP_WTSI_3_143869282	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143912079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	358 bp distal
Lmo4	LIM domain only 4	1098 bp upstream
Rr398096	regulatory region 398096	538 bp downstream
Rr406521	regulatory region 406521	1776 bp distal
Rr586601	regulatory region 586601	1109 bp distal
Rr586602	regulatory region 586602	608 bp distal
Rr586603	regulatory region 586603	1146 bp proximal
Tssr35968	transcription start site region 35968	1440 bp upstream
Tssr35969	transcription start site region 35969	1389 bp upstream
Tssr35970	transcription start site region 35970	1337 bp upstream
Tssr35971	transcription start site region 35971	1110 bp upstream
Tssr35972	transcription start site region 35972	788 bp upstream
Tssr35973	transcription start site region 35973	333 bp upstream