rs249708997 SNP Detail

Summary

• ID
  rs249708997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:136560848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    catccccta aactatactg caggcctcTG
  CACGTGATTT TTTCCCCCAT CTTTCCCTCC TGGTTTGAGA ATCGAGGCAT GCTCACAGCT
  CTCCTGAAGC AACTGCTTAT AATTTCCTGT TTTCAGAATC AGTCTCCTAA TAACCCACCA
  R
  GGCACTGTAA AACTTGGTCT CCTCATCCAC AGACAGTGTT GGTCAGTATT GCTGCTATTC
  TGACGCAGCT GAAAGGCCTC AGCGACGTGT GTGGGCCTCA GAAGAAAGGC TTTTGGATCC
  TGTTGTCTCA GCAATGCTTC TGCTGTCAAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320519226	CHEV_2_136544664	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249708997					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136560848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr565864	regulatory region 565864			1387 bp proximal
Rr565865	regulatory region 565865			1498 bp proximal
Snap25	synaptosomal-associated protein 25			Intron
				Noncoding-Transcript-Variant