rs249681239 SNP Detail

Summary

• ID
  rs249681239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113053226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGGAAG GGATTCTCCC
  AGGCCCAGGG CGGTCCTCAG AAGCCAGGAG GCAGCAGAGA ACTCCCAGAA AGGTATTGCA
  ACACTCCCCT CCCCCCTCCG GAGAAGGGTG CGGCCTTCTC CCCGCCTACT CCACTGCAGC
  TCCCTTACTG ATAACAACTC AGAGCGACTT TGGGAGAGCA AGTGCTTCCT GCCTCCAAAA
  Y
  AGCCCAACTG AGCCCTCGCT CCTTCCCTCC ACTCCCCGGA GTGCGCGATG GAGGTCTGGC
  TCAGCACGCC CCTCTTGAGG CAACTCAAGT CGGAAACGTG CTTGCACCCG CCCCGCAGCC
  GCTCAGCCCT ACTGCCCGTC CCCGCCCCCA GCGCGCGCTT CCTGCCACGT TGCGCAGGGG
  CGCGCGGCCA GACTCTGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369705665	MGP_WTSI_6_113026259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249681239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369705665	MGP_WTSI_6_113026259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113053226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	within coordinates
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	within coordinates
Rr636448	regulatory region 636448	1623 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	123 bp proximal
Rr636451	regulatory region 636451	1037 bp proximal
Rr636452	regulatory region 636452	1049 bp proximal
Rr636453	regulatory region 636453	1385 bp proximal
Setd5	SET domain containing 5	1100 bp upstream
Tssr58166	transcription start site region 58166	1089 bp upstream
Tssr58167	transcription start site region 58167	1122 bp upstream
Tssr58168	transcription start site region 58168	1190 bp upstream
Tssr58169	transcription start site region 58169	1302 bp upstream
Tssr58170	transcription start site region 58170	1366 bp upstream
Tssr62428	transcription start site region 62428	52 bp downstream
Tssr62429	transcription start site region 62429	916 bp downstream
Tssr62430	transcription start site region 62430	972 bp downstream