rs249589740 SNP Detail

Summary

• ID
  rs249589740
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69032581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTATAT AGTATATGAA
  TCACATTTCA AGGAACCTGT TAAAAATTGG TAGCAAAAAA AAATTAGAGA TTGTTTGGTT
  ACCTGATGTT TTTCTAAAAT TTCTAACTTT GGAGTATTTA TCAAATTTAT ATTCCCTAAC
  TTGTGATTTT TCCCATTCTA GATATTCATA TTAGTAAAAA TAAATAGGTA TTTTTCAACA
  W
  GTAAATTTAA TGACAACTAT GAACTATACA TTTAAAAAGT TGGCTTTTGT TACATGTAAA
  TTACTCCAAT AAAGAGATTA AATTTGGGAG CTGAAGAAAT GGTTCAGTTC TAAGCACTCA
  CATGGCAGCT CCCAGCTGGA AGCAACTCCA CTTCCAAAGG ATGGGCTCCC TGGCCACAGG
  GCACACACAT GATGCACATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358315272	MGP_WTSI_3_68929170	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249589740					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358315272	MGP_WTSI_3_68929170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69032581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	664 bp proximal
Kpna4	karyopherin subunit alpha 4	Intron
Rr397714	regulatory region 397714	1762 bp upstream
Rr578129	regulatory region 578129	703 bp proximal
Rr578130	regulatory region 578130	787 bp proximal
Rr578131	regulatory region 578131	935 bp proximal
Rr578132	regulatory region 578132	1834 bp proximal
Tssr902	transcription start site region 902	1779 bp downstream
Tssr33536	transcription start site region 33536	108 bp downstream
Tssr33537	transcription start site region 33537	1593 bp downstream
Tssr33538	transcription start site region 33538	1788 bp downstream
Tssr33539	transcription start site region 33539	1819 bp downstream
Tssr33540	transcription start site region 33540	1850 bp downstream