rs249573807 SNP Detail

Summary

• ID
  rs249573807
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83420598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATATAAA GACAACTGGG
  TCACTTCAAG TGACCACTTC CTGACAAACG GATCTGAGAA TACTAATATC TTCACCCTTC
  CCAATGCCGC TTCCTGACCC CTCCCCCGCA TGCTAATGTA CTGCATGGCT GAATCCAAAC
  AGTGCCTCCC TCCCTCTGCC AGGCCCTCTG CCAGCAAGCC TTCCCAGCCA GGCTCCTCCC
  S
  GGCCCCAGGA ACAACATTCG GCCTCTTCTG CAGCACCAGT CACATTCAAG CAGTCCTTTA
  TTTACAGTCG GTCCCCACGT GGGTGGGGCC CTGTCTTCCC TCTTTCCTAG GTCTACACAT
  AACTGGAATG TGCTGAGCTG AGTTCTGTCT CAGGAGTGTG GAGTGGCAGG GGGCTGGGCA
  CTGAGACGAG GAGGCCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369031638	MGP_WTSI_6_83393610	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249573807					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369031638	MGP_WTSI_6_83393610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83420598 () rs orientation: forward

Symbol	Name	Function Class
B230319C09Rik	RIKEN cDNA B230319C09 gene	within coordinates
Cpgi17603	CpG island 17603	1602 bp distal
Rr632862	regulatory region 632862	1952 bp distal
Rr632864	regulatory region 632864	1796 bp distal
Rr632865	regulatory region 632865	1747 bp distal
Rr632866	regulatory region 632866	1914 bp proximal
Tet3	tet methylcytosine dioxygenase 3	Intron
Tssr61647	transcription start site region 61647	1952 bp upstream
Tssr61648	transcription start site region 61648	1932 bp upstream
Tssr61649	transcription start site region 61649	892 bp upstream