rs249532464 SNP Detail

Summary

• ID
  rs249532464
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148695222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGGGTGC GCGCGCGCGT
  GTGTGTGTGT GTGTGTGCAA GTGTGTGTGC CTGTGAGTGC GAGTGTGTGT GAGCGTGTGT
  GAGCCGGGAG AGAGTGAGAG CTAGAGAAGA GCAGGGAGAG CAGGGAGCGA GAGGCGGGGA
  GCCCGAAGTC CTGACACGGA CTCAGCTAGG GCTGAACTGG AGTCACCTCC TGCCTCCTCC
  W
  CCTCCTCGTC GTCGTCAGTC CCCACCCCCA GCCCCCTCAG CCCAGGACTG CTAATCATAT
  AAACATATGA GCGCGGACCG CGGCGCAGCA TCCGTCTCTC CCTCCCTCGT TTGCCAGCCA
  AGAGGCTTGT GCAAACTCCA AAGAAGAGAG GCAGCTGAGT ACAAAACGCG GAGCAGATAA
  TCTAGAACTC ATTGCGCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321017041	CHEV_3_148652550	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249532464					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148695222 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Cpgi13930	CpG island 13930	within coordinates
Gm43573	predicted gene 43573	within coordinates
Rr587240	regulatory region 587240	1942 bp distal
Rr587241	regulatory region 587241	270 bp distal
Rr587242	regulatory region 587242	within coordinates
Rr587243	regulatory region 587243	959 bp proximal
Tssr36077	transcription start site region 36077	489 bp upstream
Tssr36078	transcription start site region 36078	479 bp upstream
Tssr36079	transcription start site region 36079	235 bp upstream
Tssr36080	transcription start site region 36080	197 bp upstream
Tssr36081	transcription start site region 36081	174 bp upstream
Tssr36082	transcription start site region 36082	90 bp upstream
Tssr36083	transcription start site region 36083	64 bp upstream
Tssr36084	transcription start site region 36084	33 bp upstream
Tssr36085	transcription start site region 36085	16 bp upstream
Tssr36086	transcription start site region 36086	126 bp downstream
Tssr36087	transcription start site region 36087	400 bp downstream
Tssr36088	transcription start site region 36088	514 bp downstream
Tssr36089	transcription start site region 36089	933 bp downstream
Tssr36090	transcription start site region 36090	983 bp downstream