rs249506686 SNP Detail

Summary

• ID
  rs249506686
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84488923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCGAAA CACCAAAAAA
  GGCATATACT ACCATGCTAA ACTCATTCCT TGAAAAAACA ATTTTTTTAA ATCATTGTTT
  TTAGTACCAT CACTGAAAAG CTTGTAGTCA GAATCTGAGC CTCCCCACAA CTTGAGTCAC
  CACTTCTCTG AGATTCAGGA CTGGAACTGA ATCCATGGGG CCTGGGGGGG GGGGGGGGGG
  S
  CGAGGAGCAG GGGGAAAGGT GGTCAGAAAC CAGTCCGTAT TTTTTTTTTT TCTGAACCTG
  TCTCTTCTTA GAAAATACCT ATCTTAATCA GCAATCTTGC AAGCAGAAAC GTATGTTTGG
  TTTTTTTTCT CCAAAAGATC TAGAAGGATC TAGCCAGGAC AACGGTTATT TGCAGCCTCT
  TCAAGAAGAA CACGCACACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss354685562	MGP_WTSI_2_84498736	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	C	G	G	C	G	G	G	G	C	G	C	C	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs249506686					SNP	G	C	G	C	G	G	C	G	G	G	G	C	G	C	C	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354685562	MGP_WTSI_2_84498736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84488923 () rs orientation: forward

Symbol	Name	Function Class
Btbd18	BTB domain containing 18	500 bp upstream
Cpgi11859	CpG island 11859	266 bp proximal
Gm28635	predicted gene 28635	Intron
Rr560294	regulatory region 560294	901 bp proximal
Rr560295	regulatory region 560295	1608 bp proximal
Rr560296	regulatory region 560296	1886 bp proximal
Tssr18670	transcription start site region 18670	486 bp upstream