rs249506159 SNP Detail

Summary

• ID
  rs249506159
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7854377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACCACAA AGAATAAAGG
  GAACCAATAC CACAAGGGGC ACTCAGTAGT TCAGTCAAAA TATCCTGAGA TATAGCTGAA
  AGAATTGTGT GTTTAAATGA TAAATGAAGA GTTGAGACAA TTTGATTTCC AGAACACCAG
  GTGCCTGTGT TGTGGATTAA GATGTTCTAG GAAGGCCTTT GTTTTTTTTT TTTTTGTTTT
  G
  TTTTGTTTTA TTTTTTTGCA GGGAATGGAA ATTAGAGAAG ATAAAGGGGA GCAGTGGGGT
  GATGTTTTAT GTTTCTAGGT TAGGAAATTA TGGAAATAAT CATAGCATAA AACTTGTAAG
  ATTTGCTTGA AGAATAAGGA ATTTGCTGAA GCAAAATATT AGGAATTATA AACAACTATA
  GATGTTAGTT AAAATGAAAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	KK/HlJ	NZB/BlNJ
ss360512799	MGP_WTSI_4_7781524	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	KK/HlJ	NZB/BlNJ
rs249506159					SNP	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360512799	MGP_WTSI_4_7781524	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7854377 () rs orientation: forward

Symbol	Name	Function Class
Rr588479	regulatory region 588479	1791 bp distal
Rr588480	regulatory region 588480	669 bp distal
Rr588481	regulatory region 588481	819 bp distal