rs249499359 SNP Detail

Summary

• ID
  rs249499359
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113309239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAAAGGGC CTTTGTGCGG GTACATTATG
  TGCACTGCTG TTTGTATGTA GAAGTTTTCA GAGGGAAGAG GCGGAAAGTT AATACTGGTT
  ACCTTTGGGG AGACAGATGG AAAGATGTTT CTATTTTACc ttctcttctc ttctcttctc
  W
  tctcttctct tctcttctct tctcttctct tctcttttcA TTACATGTGC TTACAGAATG
  TTTTGTTGAT GTCAATAGAT CTATCAGACT ATTAGaattt ataatttatc tttatttttt
  ataCTCCTCT GTGTCTTTTT TTCTTTTATT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910521	CHEV_6_113282272	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249499359					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113309239 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk1	calcium/calmodulin-dependent protein kinase I			1846 bp downstream
Ogg1	8-oxoguanine DNA-glycosylase 1			Intron
				Noncoding-Transcript-Variant
Rr636491	regulatory region 636491			1340 bp distal
Rr636492	regulatory region 636492			603 bp proximal
Tssr58198	transcription start site region 58198			1026 bp upstream