rs249488328 SNP Detail

Summary

• ID
  rs249488328
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:137818839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGCTAA CACTATACAG
  GCTATATGTG GATATATATA TAAAACAAAA TTAATGAAAA GTGAGGCCAT GGATTTGAAA
  GAGAGCAGAG AAGGTTATAT AGAAGGTTTT GGAGAGAGGA AAGGAAATGG AAAATGGTGT
  AATTATATTC TCAAATATAT TATTATAGTA ATATAATGTA AATTGTATTA TATAACATAT
  K
  ATTATAATTA TATAATATAA ATTATATGTT TATATAATAT ATAAATTATT TATAAATATA
  AATATTATAT ATTTCATATA AATTGTAAAA ATAATTATAT TCTCAAAAAG AAATAATTAA
  AAATAATTTA CTGAGAAAAC TAACAGAGTG GAAATATAAA TTAATATAAC CACTCTAGAA
  AACTGTTGAC AAAAACTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss355836325	MGP_WTSI_2_137802655	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs249488328					SNP	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355836325	MGP_WTSI_2_137802655	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:137818839 () rs orientation: forward

Symbol	Name	Function Class
Rr565959	regulatory region 565959	950 bp proximal
Rr565960	regulatory region 565960	1084 bp proximal