rs249488190 SNP Detail

Summary

• ID
  rs249488190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCTGCT TTGTATAATT
  TGAAATGCAG ATTTGTAGTG AAGGCAGAGT TCACCTCTGC ATTGAAAGGG AAGGCAGGCC
  CAGAGCTTCC TTCCCTGCCC TCTGAGATGT GCATTTATGT CTCAGGATGG ATGAGCTTTG
  GTAGGAATGC TCAAAACCAG GACCAGCCAG ACAAACTGGC AGTCCCTGTA AGCGGTTCCC
  R
  GGTCATAGGG TTAGGGCACC CCTGTTTAAC TTTGGGGTGG GGAAAGTATC TGGTTTTCTT
  TGATAAATTG CTTGTGAACC ACATTTGCCA AGTGGCCTCC AGGCCTCAAA CTCAAAGACC
  GAGCTAAATC GACTCGGAAG GCAATGCTGA ATGAAGATTG TGGGAACTGA GATAGATACA
  CTCCTCTATG TTGCAATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791610	MGP_WTSI_6_117125875	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249488190					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791610	MGP_WTSI_6_117125875	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152818 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637289	regulatory region 637289	1533 bp distal
Rr637290	regulatory region 637290	1785 bp distal
Rr637291	regulatory region 637291	1734 bp distal
Rr637292	regulatory region 637292	486 bp proximal
Tssr58408	transcription start site region 58408	1956 bp downstream
Tssr58409	transcription start site region 58409	1928 bp downstream
Tssr58410	transcription start site region 58410	1910 bp downstream
Tssr58411	transcription start site region 58411	1879 bp downstream
Tssr58412	transcription start site region 58412	1867 bp downstream
Tssr58413	transcription start site region 58413	1843 bp downstream
Tssr58414	transcription start site region 58414	1821 bp downstream
Tssr58415	transcription start site region 58415	1803 bp downstream
Tssr58416	transcription start site region 58416	1785 bp downstream
Tssr58417	transcription start site region 58417	1731 bp downstream
Tssr58418	transcription start site region 58418	1705 bp downstream
Tssr58419	transcription start site region 58419	1685 bp downstream
Tssr58420	transcription start site region 58420	1650 bp downstream
Tssr58421	transcription start site region 58421	1626 bp downstream
Tssr58422	transcription start site region 58422	1613 bp downstream
Tssr58423	transcription start site region 58423	1592 bp downstream
Tssr58424	transcription start site region 58424	1533 bp downstream
Tssr58425	transcription start site region 58425	1494 bp downstream
Tssr58426	transcription start site region 58426	1476 bp downstream
Tssr58427	transcription start site region 58427	1442 bp downstream
Tssr58428	transcription start site region 58428	1431 bp downstream
Tssr58429	transcription start site region 58429	1353 bp downstream
Tssr58430	transcription start site region 58430	1322 bp downstream
Tssr58431	transcription start site region 58431	1223 bp downstream
Tssr58432	transcription start site region 58432	1142 bp downstream
Tssr58433	transcription start site region 58433	1117 bp downstream
Tssr58434	transcription start site region 58434	670 bp downstream
Tssr62622	transcription start site region 62622	1565 bp upstream
Tssr62623	transcription start site region 62623	1545 bp upstream
Tssr62624	transcription start site region 62624	1399 bp upstream
Tssr62625	transcription start site region 62625	1260 bp upstream
Tssr62626	transcription start site region 62626	1195 bp upstream
Tssr62627	transcription start site region 62627	1150 bp upstream
Tssr62628	transcription start site region 62628	1018 bp upstream
Tssr62629	transcription start site region 62629	838 bp upstream