rs249443057 SNP Detail

Summary

• ID
  rs249443057
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCATGAA ATATGTTCTC
  CTTACGTGCC TCAGCCTTTC AAAGTTCTGT GCATTAGAGT CAGGAATTCC ATTCTTCCTG
  GAGCTAAGCG TGGGGCCAGC TGTGTAAGTA AAGTTTTGTT TTTCTTCTTA AACAACTTTT
  TCCCTCTATT TAAAAATGTG AAGAAAAAGG CAAAAAAAAC AACAACAAAA AAAAAAACAA
  M
  AAAAAAAAAC CCACCAAAAA ACCTAGATAT TCTTTTCTTT CATTTTTGCT CTCTTTAGTG
  GAAAGAAAAG GAATAAAAAG TTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAACTCAC CCTTTTCAAG
  CTATATAAAC ATCAAGGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	WSB/EiJ
ss358593259	MGP_WTSI_3_79689246	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	A	A	A	C	C	C	C	C	C	C	A	A	C	C	A	C	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	WSB/EiJ
rs249443057					SNP	C	C	A	C	A	A	A	C	C	C	C	C	C	C	A	A	C	C	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593259	MGP_WTSI_3_79689246	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792631 () rs orientation: forward

Symbol	Name	Function Class
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1792 bp downstream
Rr375226	regulatory region 375226	151 bp upstream
Rr578602	regulatory region 578602	1843 bp distal
Rr578604	regulatory region 578604	1766 bp distal
Rr578605	regulatory region 578605	65 bp distal
Rr578606	regulatory region 578606	510 bp proximal
Rr578607	regulatory region 578607	1030 bp proximal
Rr578608	regulatory region 578608	1479 bp proximal
Rr578609	regulatory region 578609	1528 bp proximal
Rr578610	regulatory region 578610	1568 bp proximal
Tssr29596	transcription start site region 29596	753 bp downstream
Tssr29597	transcription start site region 29597	732 bp downstream
Tssr29598	transcription start site region 29598	234 bp downstream
Tssr29599	transcription start site region 29599	205 bp downstream
Tssr29600	transcription start site region 29600	156 bp downstream
Tssr29601	transcription start site region 29601	127 bp downstream
Tssr29602	transcription start site region 29602	625 bp upstream
Tssr29603	transcription start site region 29603	716 bp upstream
Tssr29604	transcription start site region 29604	788 bp upstream
Tssr29605	transcription start site region 29605	857 bp upstream
Tssr29606	transcription start site region 29606	890 bp upstream
Tssr29607	transcription start site region 29607	1560 bp upstream
Tssr29608	transcription start site region 29608	1578 bp upstream
Tssr33752	transcription start site region 33752	839 bp downstream
Tssr33753	transcription start site region 33753	857 bp downstream
Tssr33754	transcription start site region 33754	1472 bp downstream