rs249434051 SNP Detail

Summary

• ID
  rs249434051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113302953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT GTTTTTGGAG ACAGGGTTTC
  Y
  CTGTGTTGCC CTGGCTGTCC TAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910504	CHEV_6_113275986	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249434051					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113302953 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1132 bp downstream
Gm15492	predicted gene 15492	within coordinates
Ogg1	8-oxoguanine DNA-glycosylase 1	1006 bp upstream
Rr399830	regulatory region 399830	593 bp upstream
Rr636489	regulatory region 636489	within coordinates
Rr636490	regulatory region 636490	730 bp proximal
Tssr58194	transcription start site region 58194	998 bp upstream
Tssr58195	transcription start site region 58195	1027 bp upstream
Tssr58196	transcription start site region 58196	1233 bp upstream
Tssr58197	transcription start site region 58197	1251 bp upstream
Tssr62435	transcription start site region 62435	643 bp downstream
Tssr62436	transcription start site region 62436	734 bp downstream