rs249409485 SNP Detail

Summary

• ID
  rs249409485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCTGGC TGGATTTCAA
  CAGCCAGTGC TGGGGCCAAA GAGGACCCAG GCAGAGTACG AAAGGTCGGG GCTCTCCTGT
  TGCATCCTTT CTTCTGCCCT TCACACACTG GGCAGCACTA TCTTGTATTT TAATGTCCAG
  ACTCCTGAAT GCATGCTGAT TCGAGCATTC TTTACTTTAA CAACGTGCTA TTTCAAGCAC
  R
  GGGATTATTT TACTTTGCCA GGGCAGCAGT AACTTGTTTC TTGTTTGAAA ATAAAGGGAC
  TTCCTGTCCC CACAGTTTTA TCTGGGTTGT TTGAGAAGAA GAAAAAAAAA AAAAAGCTCG
  TCTTACAGAA GCCAGGCAGG TACCACCTTG CTTTCCCAAG GCAGATGAAG TAGGTGAAAG
  GTTAGTCGCA CACCCACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729368	CHEV_6_5459655	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249409485					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509655 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	1445 bp distal
Rr626155	regulatory region 626155	within coordinates
Tssr1775	transcription start site region 1775	1482 bp upstream
Tssr54862	transcription start site region 54862	1493 bp upstream