rs249406043 SNP Detail

Summary

• ID
  rs249406043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60378472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTGCCA CACTAAGTAT
  AGCTTGAGCA TAGGAGATAT CAAAGCCCAC CCCCACAGTG ACACACTTCC TCTAACAAGG
  CCACACATAA TCCTCATAGT GTCACTCCCT ATCACTAAGC ATTCAAACAC ATGAGTTCAT
  AGGGCCATAC CTATTTAAAC CATCACAATG TATCATTTCC ATAGTTTTCC ACATAATGTT
  Y
  TTGAATTGTG GCTAGACACT TGTAATTGAA ACTTTAGTCA GAGAACCCAT AGATGAGGGG
  ACACTACTAT ATCCACAGGT GCTGAGGAGG TAAGACTGGG CCTATAGGCC TAAATGATTC
  TGATGTTATA TTCACAAAAT CATGATACAA AAACAAAATC ACCTAACTAA TAATGAATCT
  CAGCAGTGGC ATTTCCTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358136961	MGP_WTSI_3_60274973	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249406043					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358136961	MGP_WTSI_3_60274973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60378472 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	1779 bp upstream
Rr397689	regulatory region 397689	1097 bp upstream
Rr577394	regulatory region 577394	1284 bp distal
Rr577396	regulatory region 577396	1777 bp distal
Rr577397	regulatory region 577397	1538 bp proximal
Tssr29248	transcription start site region 29248	1147 bp upstream
Tssr29249	transcription start site region 29249	1169 bp upstream
Tssr29250	transcription start site region 29250	1543 bp upstream
Tssr29251	transcription start site region 29251	1580 bp upstream
Tssr29252	transcription start site region 29252	1629 bp upstream
Tssr29253	transcription start site region 29253	1680 bp upstream
Tssr29254	transcription start site region 29254	1732 bp upstream
Tssr29255	transcription start site region 29255	1741 bp upstream
Tssr29256	transcription start site region 29256	1756 bp upstream
Tssr29257	transcription start site region 29257	1771 bp upstream