rs249389426 SNP Detail

Summary

• ID
  rs249389426
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105614750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGCCCAG GAATGCCTCA TGCAATTCTG
  ATTAAGGTCT GCATTTGCTT ATTGTATTAA ATTCCTGTCA AGAATGCCCT GTAGACCCTA
  CGGGATGAAC CTGTTGCAAA AGGCAACTTT AACAGGTTGT GAAATTGTCT TTGTCCAGGG
  M
  ATCCCATGTT CCCTCTTTTA CCCATTTCTT TCCTTGACAC CGAAATTCAA CCAAGAAGAG
  TTGTTCCTAA aaaacaaaac aaaacaaaac aaaacaaaac aaaacaaaac caaacCAACA
  TAGCCAAATG GCCAAATTTC CTGAAGCAAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863084	CHEV_3_105510352	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249389426					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105614750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	1898 bp distal
Inka2	inka box actin regulator 2	Intron
Rr367522	regulatory region 367522	221 bp downstream
Rr582757	regulatory region 582757	1966 bp distal
Rr582758	regulatory region 582758	1565 bp distal
Rr582759	regulatory region 582759	440 bp distal
Rr582760	regulatory region 582760	198 bp proximal