rs249384136 SNP Detail

Summary

• ID
  rs249384136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107426570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTACCCA CCCTCCCAGT
  CCAGAAGCAG CAGCCTGGGA ACAAAGGGCT GGGGCTTGAG TGTGCTATTC AACACAAACA
  ATACAGACCA CCCACACCAC ACATGCCTCC CTCCCTAGCT ACCAGGCATA GACTGAGTGT
  GTTCTCCAGT CTTGAAGATA AGGAATCTAT CAGTTCATAG ACAGGCTACA GGTGGGCAGC
  Y
  TTGAGGAGAG AAGGAGGTAG AGGCTGGGGC TTGGGAGCGA TTGTGCTGTG CACAGGTGTG
  GGGGAAGGGC ACTGAGCTGC TGGAGAATAT AACTTGATGT CTTTGGGCTG AGGGTATACA
  GGCAGGAGGG CTGAGGGCTG AGCTAGTCCC TGAAGAAGAC GCATGGCCTA ATGAAAGATG
  TGCTTCTCCG AGATGGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321249117	CHEV_4_107241978	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249384136					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107426570 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	1029 bp distal
Rr597018	regulatory region 597018	1044 bp proximal